www.academia.edu/. /TF_Target_Mapper_A_BLAST_search_tool_for_the_ identification_of_Transcription_Factor_target_genesCachedBMC Bioinformatics BioMed Central Software Open Access TF Target Mapper: A

https://www.yeastgenome.org/go/3700CachedGene Ontology Term: DNA binding transcription factor activity . The transcription

https://www.bioconductor.org/. //2.7/. /RMAPPER/. /RMAPPER.pdfCachedApr 20, 2011 . x – mapperHits object returned from readMAPPER . mapper. The data frame

biogrid.engr.uconn.edu/REU/Reports_12/Final. /Jonah.pdfCachedSimilarconjunction with a transcription factor binding site search tool. . . gene-regulation

In particular, Mapper searches for instances of known PWMs in evolutionary . for

Direct edges between transcripts and proteins: MAPPER (http://mapper.chip. org

See Marinescu, V.D., Kohane, I.S., and Riva, A., MAPPER: a search engine for

bioconductor.statistik.tu-dortmund.de/. /RMAPPER/. /readMAPPER.pdfCachedMar 30, 2012 . edu/mapper/) contains predicted binding sites for over 800 Transcription Factors

genome.ufl.edu/mapper/mapperg?m=dbCachedSimilarModels only, Enter one or more model identifiers in the Models field below, to

www.nature.com/gene/journal/v13/n8/fig_tab/gene201245f6.htmlUsing the Promoter 2.0 and the chip MAPPER program (http://snpper.chip.org/

https://dash.harvard.edu/handle/1/4817623Cached2005. MAPPER: A search engine for the computational identification of putative

https://dspace.mit.edu/bitstream/handle/. 1/. /927347507-MIT.pdf?. CachedSimilar1.3.1 Modeling transcription factor binding using motif . . . . . . . 1.3.2 Prior work on

https://omictools.com/multi-genome-analysis-of-positions-and-patterns-of- elements-of-regulation-toolCachedSimilarHarvest the potential of MAPPER database for Protein sequence analysis. .

genepi_toolbox.i-med.ac.at/?page_id=65CachedSimilarThe disruption or creation of transcription factor binding sites (TFBS) represent

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540057/Dec 17, 2004 . We describe a comprehensive map of putative transcription factor binding sites (

. RDF was performed using a version of Mapper [19] that we modified for RDF .

https://bmcbioinformatics.biomedcentral.com/. /10. /1471-2105-6-79CachedSimilarMAPPER: a search engine for the computational identification of putative

repository.ubn.ru.nl/bitstream/handle/2066/35335/35335.pdf?. 1CachedSimilarMar 8, 2006 . Software. TF Target Mapper: A BLAST search tool for the identification of.

https://www.hindawi.com/journals/bmri/2017/8402035/Mar 16, 2017 . Sp1 is a mammalian transcription factor involved in the regulation of . . The

motifmap.ics.uci.edu/CachedSimilarMotif Search allows users to select a transcription factor, view its binding

https://www.researchgate.net/. /8122356_Marinescu_VD_Kohane_IS_Riva_ AThe_MAPPER_database_a_multi-genome_catalog_of_putative_ . We describe a comprehensive map of putative transcription factor binding sites (

https://molbiol-tools.ca/Promoters.htmCachedSimilarBacPP: Bacterial promoter prediction - A tool for accurate sigma-factor .

. identification MAPPERa http://bio.chip.org/mapper/ A platform for the

https://rdrr.io/bioc/RMAPPER/CachedSep 12, 2016 . The RMAPPER package allows you to retrieve a set of predicted transcription

https://en.wikipedia.org/wiki/Mapper(2)CachedSimilarMapper(2) is a database of transcription factor binding sites in multiple genomes.

flybase.org/reports/FBgg0000335.htmlCachedThe general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH)

journals.plos.org/plosone/article?id=10.1371/journal.pone. CachedSimilarFeb 16, 2012 . (2006) TF Target Mapper: A BLAST search tool for the identification of

mbio.asm.org/content/7/3/e00559-16.fullMay 3, 2016 . IMPORTANCE Transcription factors regulate the activity of various . .. annotated

www.genome.jp/kegg/brite.htmlCachedSimilarSep 21, 2017 . 03000: Transcription factors; 03021: Transcription machinery . . The following

www.sciencedirect.com/science/article/pii/S1672022907600230SimilarIn the post-genomic era, identification of specific regulatory motifs or transcription

www.pnas.org/content/104/50/19849.longSimilarDec 11, 2007 . This includes miR-424 and the transcriptional factor NFI-A. We show that . ..

University of Florida, Gainesville: The MAPPER(2) Database: a multi-genome

tagc.univ-mrs.fr/remap/CachedSimilarA large scale integrative ChIP-seq analysis of regulatory regions. The ReMap

bioinfo.cnio.es/eccb05/PostersDetail.php?postersPage=19. id. CachedTitle, TF Target Mapper: A BLAST search tool for identification of Transcription

wenku.baidu.com/view/1edb91d53186bceb19e8bb24.html?re=viewCached2011年7月17日 . The MAPPER Platform for the Computational Identification of Transcription Factor

www.plantphysiol.org/content/165/4/1671SimilarTGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the

https://www.biostars.org/p/13471/CachedFirst, the transcription factors (TFs) regulating these three genes must be

www.oxfordjournals.org/nar/database/summary/700CachedMAPPER. NAR Molecular Biology Database Collection entry number 700 .

The MAPPER database: a multi- genome catalog of putative transcription factor

onlinelibrary.wiley.com/doi/10.1111/acel.12360/fullSimilarJun 24, 2015 . (A) List of transcription factor binding sites identified by MAPPER in the mouse

https://tmu.pure.elsevier.com/. /transcription-factor-hbp1-is-a-direct-anti- cancer-target-of-transEither FOXO1 or HBP1 transcription factor is a downstream effector of the . in the

www.labtools.us/transcription-factor-tubby/CachedTranscription factor Tubby. Transcription factor Tubby. You can use this tool

https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur. Cached. RNA short reads. RNA STAR Gapped-read mapper for RNA-seq data . . PASS

search.ebscohost.com/login.aspx?direct=true&profile. SimilarJun 18, 2012 . potentially affect a Transcription Factor Binding Site (TFBS) to a . Methods: rSNP

https://fairsharing.org/biodbcore-000058CachedSep 8, 2016 . MAPPER-2 . non-coding sequence data of genes in 3 genomes which gives

www.cell.com/cms/attachment/2107705247/2082116934/mmc1.pdfThe Genetics of Transcription Factor . MAPPER, TRANSFAC, JASPAR . Factor;

www.reactionbiology.com/. /Bromodomain-Assay-AlphaScreen.aspxCachedSimilarBPTF-[BRD]-His. Bromodomain containing transcription factor. BPTF-[PHD-BRD]-

dl.acm.org/citation.cfm?id=1093150Nov 1, 2004 . GO-Mapper: functional analysis of gene expression data using the . . the

https://www.ncbi.nlm.nih.gov/pubmed/15608292Nucleic Acids Res. 2005 Jan 1;33(Database issue):D91-7. The MAPPER

www.candidagenome.org/help/goslimhelp.shtmlCachedSimilarThe GO Slim Mapper tool at CGD was created to allow you to map the . are to

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