FELSENSTEIN 1981

Jun 19, 17
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  • https://www.e-algae.org/journal/view.php?doi=10.4490/algae. CachedDec 15, 2016 . Maximum likelihood trees were built using PHYML software (Felsenstein 1981,
  • Tuffley and Steel (1997) presented an interesting analysis of Felsenstein's (1981)
  • Felsenstein [1981, p. 186] then assumes that the branches are sufficiently similar
  • journal.frontiersin.org/article/10.3389/fmicb.2016.01340/fullCachedAug 15, 2016 . The phylogenetic tree was constructed using the maximum likelihood (ML)
  • www.g3journal.org/content/4/12/2545As originally developed, maximum likelihood (ML) phylogeny inference assumes
  • https://www.stats.ox.ac.uk/__. /Basic_Models_of_Nucleotide_Evolution_2. pdfCachedo Felsenstein 1981 (F81) o Hasegawa, Kishino and Yano (HKY85) o Tamura and
  • https://en.wikipedia.org/. /Felsenstein%27s_tree-pruning_algorithmCachedIn statistical genetics, Felsenstein's tree-pruning algorithm attributed to Joseph
  • https://scholar.google.de/citations?user=vZq8qQ4AAAAJ&hl=deCachedProfessor of Genome Sciences, and Professor of Biology, University of Washington, Seattle - gs.washington.edu23749, 1989. Evolutionary trees from DNA sequences: a maximum likelihood
  • evomics.org/resources/substitution. /nucleotide-substitution-models/CachedFelsenstein 1981 (F81, nst=1): variable base frequencies, all substitutions
  • www.cs.cmu.edu/~durand/03-711/. /markovChain18Sep2014.pdfCachedSimilarThe Felsenstein (1981) model, like the Jukes-Cantor model, assumes that all
  • link.springer.com/article/10.1007/BF01734359Apr 8, 1981 . November 1981 , Volume 17, Issue 6, pp 368–376 . Cite this article as:
  • www.cs.tau.ac.il/~tamirtul/Selected_publications/JACM2006.pdfCachedSimilarlutionary trees [Felsenstein 1981]. Finding optimal ML trees appears to be a very
  • svitsrv25.epfl.ch/R-doc/library/ape/html/mlphylo.htmlCachedSimilarThe model specified by DNAmodel is fitted using the standard ``pruning''
  • www.tandfonline.com/doi/pdf/10.1080/11250008509440344SimilarMaynard-Smith, 1966; Nei, 1976; Tem pleton, 1980 a, b; Felsenstein, 1981; Lan
  • https://www.jstor.org/stable/2408134JOSEPH FELSENSTEIN. Department of Genetics, University of Washington,
  • biorxiv.org/content/biorxiv/early/2016/04/27/025536.full.pdfCachedSep 10, 2015 . We calculate this via the Felsenstein (1981) model of nucleotide substitution. This
  • www.genetics.org/content/206/1/417May 1, 2017 . Using codon frequencies in absence of a known root, as is usually done during
  • scholar.google.com/citations?user=vZq8qQ4AAAAJ&hl=ruCachedProfessor of Genome Sciences, and Professor of Biology, University of Washington, Seattle - gs.washington.eduJoe Felsenstein. Подписаться . Joe Felsenstein. Professor of . 791, 1981.
  • https://wp.biota.utoronto.ca/theseedsofscience/. /Felsenstein-1981.pdfCachedEuoltrtion, 35(1), 1981, pp. 124-138. SKEPTICISM . JOSEPH FELSENSTEIN.
  • https://www.ctu.edu.vn/~dvxe/Bioinformatic/Software/. /theory.htmlCached(These effects give rise to the "inconsistency" problem with Maximum Parsimony (
  • www.nature.com/articles/hdy1994180Here we show that in both the Felsenstein (1981) and Kirkpatrick (1982) models,
  • resources.qiagenbioinformatics.com/manuals/. /index.php?manual. CachedFelsenstein, 1981: Felsenstein, J. (1981). Evolutionary trees from DNA
  • https://academic.oup.com/mbe/article-pdf/15/7/. /mbev_15_07_0871.pdfincreased (Felsenstein 1981; Saitou 1988; Kishino and. Hasegawa 1989;
  • www.cibiv.at/~hschmidt/publ/ismb99poster.psCachedThe algorithm introduced by Felsenstein (1981) for computing the max-. imum
  • https://cran.r-project.org/web/packages/Rphylip/Rphylip.pdfCachedSimilarFeb 19, 2015 . Felsenstein, J. (1989) PHYLIP–Phylogeny Inference Package (Version 3.2). .
  • ijs.microbiologyresearch.org/content/journal/. /ijs.0.035501-0?. Cached. 1981 ) algorithms by using the phylip package ( Felsenstein, 2005 ). Sequence
  • https://hfv.lanl.gov/content/sequence/findmodel/modelsets.htmlCachedReduced set: JC : Jukes-Cantor (model 1) JC+G : Jukes-Cantor plus Gamma (
  • https://iths.pure.elsevier.com/. /evolutionary-trees-from-dna-sequences-a- maximum-likelihood-approaCachedFelsenstein, J. (1981). Evolutionary trees from DNA sequences: A maximum
  • scholar.google.pt/citations?user=vZq8qQ4AAAAJ&hl=pt-PTCachedProfessor of Genome Sciences, and Professor of Biology, University of Washington, Seattle - gs.washington.edu23722, 1989. Evolutionary trees from DNA sequences: a maximum likelihood
  • https://www.rdocumentation.org/packages/Rphylip/versions/0.1. /Rdnaml?This function is an R interface for dnaml in the PHYLIP package (Felsenstein .
  • www.stat.rice.edu/~mathbio/proposalwhole.PDFCachedSimilartree which has the highest probability of evolving the given data (Felsenstein
  • Felsenstein, ). (1978) Cases in which parsimony or compatibility methods will be
  • www.ihes.fr/~carbone/MaximumLikelihood2.pdfCachedSimilarmoving from the endnodes of the tree to the root (Felsenstein, 1981). A.Carbone -
  • genome.cshlp.org/content/8/12/1233.longFelsenstein (1981) proposed a model in which the rate of substitution to a .
  • www.saitou-naruya-laboratory.org/assets/. /Hasegawa_JME91.pdfCachedSimilarrate constancy (Felsenstein 1981), and of other methods for inferring trees from
  • www.stat.nctu.edu.tw/hwang/Variance.htmCachedMolecular Phylogenetics and Evolution, to appear. ◇ Download the R-codes. ○
  • https://en.wikipedia.org/wiki/Joseph_FelsensteinCachedSimilarJoseph "Joe" Felsenstein (born May 9, 1942) is Professor in the Departments of
  • hendrixlab.cgrb.oregonstate.edu/teaching/ab/AB.pdfCachedApr 9, 2017 . 4.3.5 Felsenstein 1981 model (F81) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45. 4.3.6
  • www.stat.berkeley.edu/~terry/Classes/s260.1998/. /node8.htmlCachedSimilarFelsenstein (1973,1981) brought the maximum likelihood framework to
  • www.stat.wisc.edu/~larget/phylogeny/felsenstein-jrssa-1983.pdfCachedSimilarMay 22, 2003 . from those of C and G. I used one (Felsenstein, 1981c) in which all four bases
  • https://pdfs.semanticscholar.org/. / b949d062a1134c4d98924f51312090e76514.pdfSpringer-Verlag 1981. Evolutionary Trees from DNA Sequences: A Maximum
  • www.bio.fsu.edu/~stevet/VSU/Bio7020/Felsenstein_09.pdfCachedSimilar0= ∑s πs L. (i). 0. (s). (Felsenstein, 1973, 1981) and having gotten the likelihoods
  • https://scholar.google.com/citations?user=vZq8qQ4AAAAJCachedProfessor of Genome Sciences, and Professor of Biology, University of Washington, Seattle - gs.washington.eduJournal of molecular evolution 17 (6), 368-376, 1981. 9520, 1981. Phylogenies
  • https://www.ncbi.nlm.nih.gov/pubmed/7288891J Mol Evol. 1981;17(6):368-76. Evolutionary trees from DNA sequences: a
  • onlinelibrary.wiley.com/doi/10.1111/j.1558-5646.1981.tb04991.x/fullJoseph Felsenstein . First published: November 1981 Full publication history;
  • ftp://statgen.ncsu.edu/pub/thorne/bioinf2/evomodel2017.pdfCachedFelsenstein 1981 model assumes sequence positions evolve indepen- dently
  • meme-suite.org/doc/motiph.htmlCachedSimilarf81, Felsenstein 1981, equilibrium base frequencies are taken from the alignment
  • darwin.uvigo.es/download/papers/14.modelSelection01.pdfCachedSimilarparing two models of evolution (Felsenstein,. 1981, 1988; Goldman, 1993).
  • evolution.genetics.washington.edu/phylip/doc/contml.htmlCachedSimilarGomberg (1966), Felsenstein (1973b, 1981c) and Thompson (1975) have done

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